Publications

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Publications

  2. Prototype Learning for Out-of-Distribution Polyp Segmentation

    Authors: Nikhil Kumar Tomar, Debesh Jha, Ulas Bagci

    AAAI 2026 (AIMedHealth26 Workshop)

    Publication Year: 2026

    [Paper]

  2. IPMN Risk Assessment with Subregional Radiomics and Deep Learning

    Authors: Andrea Mia Bejar, Eminenur Sen Tasci, Max Nelson, Halil Ertugrul Aktas, Katie Wu, Ziliang Hong, Elif Keles, Muhammed Enes Tasci, Frank H Miller, Michael B Wallace, Rajesh N Keswani, Gorkem Durak, Ulas Bagci

    MAYO CLINIC INNOVATIONS IN GASTROENTEROLOGY AND HEPATOLOGY 2026: ARTIFICIAL INTELLIGENCE AND BEYOND

    Publication Year: 2026

  2. In-depth Radiological and Explainability Analysis of Deep Learning

    Authors: Halil Ertugrul Aktas, Andrea Mia Bejar, Ziliang Hong, Rutger Hendrix, Hongyi Pan, Elif Keles, Fergan Bol, Yavuz Bahadir Taktak, Yuri Velichko, Alpay Medetalibeyoglu, Sukru Mehmet Erturk, Lili Zhao, Frank H. Miller, Michael Wallace, Rajesh N. Keswani, Gorkem Durak, and Ulas Bagci

    Mayo Clinic Innovations in Gastroenterology and Hepatology 2026: Artificial Intelligence and Beyond

    Publication Year: 2026

  2. Functional MRI Scoring as a Noninvasive Method to Predict Hepatic Functional Reserve

    Authors: G. Durak, Y.B. Taktak, B. Gültekin, S. Bayrak, E. Özkan, Ö. Ikizgül, E. Aktas, M. Ertürk, A. Medetalibeyoglu, U. Bagci

    ASC 2026

    Publication Year: 2026

    [Paper]

  2. Predicting Pulmonary Fibrosis Risk in Post-COVID Patients using Deep Learning and Radiomics on CT

    Authors: Wanying Dou, Andrea Bejar, Halil Ertugrul Aktas, Gorkem Durak, Elif Keles, Drew Torigian, Jayaram Udupa, Ulas Bagci

    ARRS 2026

    Publication Year: 2026

  2. Validating Synthetically Generated Medical Scans through Human Perceptual Assessment & Eye-Tracking

    Authors: David Wong, Bin Wang, Gorkem Durak, Halil Ertugrul Aktas, Marouane Tliba, Hatice Savas, Elizabeth Krupinski, Ulas Bagci

    ARRS 2026

    Publication Year: 2026

  2. Detecting Metaplastic Histology in Triple-Negative Breast Cancer with Machine Learning

    Authors: Rana Gunoz Comert, Gorkem Durak, Ravza Yilmaz, Halil Ertugrul Aktas, Zeynep Tuz, Jun Zeng , Sukru Mehmet Erturk, Ulas Bagci

    ARRS 2026

    Publication Year: 2026

  2. ROLE OF IMAGING IN PANCREATIC CANCER SCREENING FOR HIGH-RISK POPULATION WITH GENETIC AND HEREDITARY CAUSES LINKED TO SPECIFIC GENETIC SYNDROMES OR MUTATIONS

    Authors: Pardeep K. Mittal, MD, Srinivasa R. Prasad, MD, Anil K. Dasyam, MD, Venkata S. Katabathina, MD, Courtney C. Moreno, MD, Camila Lopes Vendrami, MD, Ulas Bagci, MSc, PhD, Frank H. Miller

    RSNA 2025

    Publication Year: 2025

    [Paper]

  2. Outperforming State-of-the-Art in Pediatric Brain Tumor Segmentation with a Dual NNU-Net Model Based on Radiological Reasoning

    Authors: Elif Keles, Max Bengtsson, Gorkem Durak, Syed M. Anwar, Yuri Velichko, Marius G. Linguraru, Angela Waanders, Ulas Bagci

    RSNA 2025

    Publication Year: 2025

    [Paper]

  2. A PREDICTIVE MRI RADIOMICS MODEL FOR IMPROVED SOFT TISSUE SARCOMA SUBTYPE DIFFERENTIATION

    Authors: Laetitia Perronne, MD, MSc, Nicolo Gennaro, MD, Mirinae Seo, MD, Zuzanna Kobus, MD, Linkai Peng, BEng, Gorkem Durak, MD, Ulas Bagci, MSc, PhD, Amir Borhani, MD, Hatice Savas, MD, Linda C. Kelahan, MD, Kamal Subedi, MD, Ryan J. Avery, MD, Tugce Agirlar Trabzonlu, MD, Chase S. Krumpelman, MD, PhD, Seth Pollack, MD, Pedro Hermida De Viveiros, Yuri Velichko, PhD

    RSNA 2025

    Publication Year: 2025

    [Paper]

  2. Foundational Tumor Segmentation Models

    Authors: Sirui Li, Linkai Peng, Halil Ertugrul Aktas, Zheyuan Zhang, Gorkem Durak, Ulas Bagci,

    RSNA 2025

    Publication Year: 2025

    [Paper]

  2. Multi-Center Radiomics–Deep Learning Fusion Model for Stratifying IPMN Malignancy Risk on MRI

    Authors: Andrea Bejar, Ziliang Hong, Gorkem Durak, Elif Keles, Halil Ertugrul Aktas, Zheyuan Zhang, Hongyi Pan, Fergan Bol, Chao Chen, Concetto Spampinato, Alpay Medetalibeyoglu, Sukru Mehmet Erturk, Gulbiz M. Kartal, Yuri Velichko, Emil Agarunov, Ziyue Xu, Sachin Jambawalikar, Ivo Schoots, Marco Bruno, Tamas Gonda, Candice W. Bolan, Frank H. Miller, Rajesh Keswani, Pallavi Tiwari, Ulas Bagci

    RSNA 2025

    Publication Year: 2025

    [Paper]

  2. Hybrid Intelligence in Oncology: Comparing Human Experts and Large Language Models in Interpreting Complex Cancer Treatment Guidelines

    Authors: Berna Yildirim, Baver Bunyamin Tutun, Gorkem Durak, Emre Batuhan Yildirim, Emre Uysal, Sukru Mehmet Erturk, Ulas Bagci,

    RSNA 2025

    Publication Year: 2025

    [Paper]

  2. IPMN Malignancy Risk Assessment Using MRI Under Federated Learning Paradigm

    Authors: Halil Ertugrul Aktas, Andrea Bejar, Ziliang Hong, Hongyi Pan, Gorkem Durak, Elif Keles, Alpay Medetalibeyoglu, Zheyuan Zhang, Yuri Velichko, Concetto Spampinato, Ivo Schoots, Marco Bruno, Pallavi Tiwari, Candice W. Bolan, Tamas Gonda, Frank H. Miller, Rajesh Keswani, Ziyue Xu, Ulas Bagci

    RSNA 2025

    Publication Year: 2025

    [Paper]

  2. Imaging Biomarkers for Pancreatic Adenocarcinoma Risk Stratification in Incidental Pancreatic Cysts: A Multi-Hospital Cohort Study

    Authors: Andrea Bejar, Gorkem Durak, Frank H. Miller, Ulas Bagci, Rajesh Keswani

    RSNA 2025

    Publication Year: 2025

    [Paper]

  2. Automated 3D CT Report Generation Using LLM with Expert-Informed Assessment

    Authors: Vanshali Sharma, Andrea Bejar, Wanying Dou, Gorkem Durak, Ulas Bagci

    RSNA 2025

    Publication Year: 2025

    [Paper]

  2. Pediatric Pancreas Segmentation from MRI Scans with Deep Learning

    Authors: Elif Keles, Merve Yazol, Gorkem Durak, Ziliang Hong, Halil Ertugrul Aktas, Zheyuan Zhang, Linkai Peng, Cemal Yazici, Ulas Bagci

    RSNA 2025

    Publication Year: 2025

    [Paper]

  2. Generative AI and Foundation Models in Radiology: Applications, Opportunities, and Potential Challenges

    Authors: Neda Tavakoli, Zahra Shakeri, Vrushab Gowda, Konrad Samsel, Arash Bedayat, Ahmadreza Ghasemiesfe, Ulas Bagci, Albert Hsiao, Tim Leiner, James Carr, Daniel Kim, Amir Ali Rahsepar

    RADIOLOGY

    Publication Year: 2025

    [Paper]

  2. SAM-guided prompt learning for Multiple Sclerosis lesion segmentation

    Authors: Federica Proietto Salanitri, Giovanni Bellitto, Salvatore Calcagno, Ulas Bagci, Concetto Spampinato, Manuela Pennisi

    Pattern Recognition Letters

    Publication Year: 2025

    [Paper]

  2. DuetMatch: Harmonizing semi-supervised brain MRI segmentation via decoupled branch optimization

    Authors: Thanh-Huy Nguyen, Hoang-Thien Nguyen, Vi Vu, Ba-Thinh Lam, Phat Huynh, Tianyang Wang, Xingjian Li, Ulas Bagci, Min Xu

    Computerized Medical Imaging and Graphics

    Publication Year: 2025

    [Paper]

  2. AdverIN: Monotonic Adversarial Intensity Attack for Domain Generalization in Medical Image Segmentation

    Authors: Zheyuan Zhang, Bin Wang, Lanhong Yao, Elif Keles, Debesh Jha, Matthew Antalek, Gorkem Durak, Alpay Medetalibeyoglu, Concetto Spampinato, Baris Turkbey, Boqing Gong, Ulas Bagci

    Medical Image Analysis

    Publication Year: 2025

    [Paper]

  2. Label-Efficient Cross-Modality Generalization for Liver Segmentation in Multi-Phase MRI

    Authors: Quang-Khai Bui-Tran, Minh-Toan Dinh, Thanh-Huy Nguyen, Ba-Thinh Lam, Mai-Anh Vu, Ulas Bagci

    CARE 2025 Challenge - MICCAI

    Publication Year: 2025

    [Paper]

  2. Pancreas Part Segmentation under Federated Learning Paradigm

    Authors: Ziliang Hong, Halil Ertugrul Aktas, Andrea Mia Bejar, Katherine Wu, Hongyi Pan, Gorkem Durak, Zheyuan Zhang, Sait Kayali, Temel Tirkes, Federica Proietto Salanitri, Concetto Spampinato, Michael Goggins, Tamas Gonda, Candice Bolan, Raj Keswani, Frank Miller, Michael Wallace, Ulas Bagci

    Predictive Intelligence in Medicine (PRIME)-MICCAI

    Publication Year: 2025

    [Paper]

  2. Imaging-Based Mortality Prediction in Patients with Systemic Sclerosis

    Authors: Alec K Peltekian, Karolina Senkow, Gorkem Durak, Kevin M Grudzinski, Bradford C Bemiss, Jane E Dematte, Carrie Richardson, Nikolay S Markov, Mary Carns, Kathleen Aren, Alexandra Soriano, Matthew Dapas, Harris Perlman, Aaron Gundersheimer, Kavitha C Selvan, John Varga, Monique Hinchcliff, Krishnan Warrior, Catherine A Gao, Richard G Wunderink, GR Budinger, Alok N Choudhary, Anthony J Esposito, Alexander V Misharin, Ankit Agrawal, Ulas Bagci

    Predictive Intelligence in Medicine (PRIME) - MICCAI

    Publication Year: 2025

    [Paper]
    [Data]

  2. GMAT: Grounded Multi-agent Clinical Description Generation for Text Encoder in Vision-Language MIL for Whole Slide Image Classification

    Authors: Ngoc Bui Lam Quang, Nam Le Nguyen Binh, Thanh-Huy Nguyen, Le Thien Phuc Nguyen, Quan Nguyen, Ulas Bagci

    International Workshop on Emerging LLM/LMM Applications in Medical Imaging - MICCAI

    Publication Year: 2025

    [Paper]

  2. Radiomics for Detecting Metaplastic Histology in Triple-Negative Breast Cancer: A Step Towards Personalized Therapy

    Authors: Rana Gunoz Comert, Gorkem Durak, Ravza Yilmaz, Halil Ertugrul Aktas, Zeynep Tuz, Hongyi Pan, Jun Zeng, Aysel Bayram, Baran Mollavelioglu, Sukru Mehmet Erturk, Ulas Bagci

    Bioengineering

    Publication Year: 2025

    [Paper]

  2. ViCTr: Vital Consistency Transfer for Pathology Aware Image Synthesis

    Authors: Onkar Susladkar, Gayatri Deshmukh, Yalcin Tur, Gorkem Durak, Ulas Bagci

    IEEE ICCV 2025

    Publication Year: 2025

    [Paper]

  2. VideoAds for Fast-Paced Video Understanding: Where Opensource Foundation Models Beat GPT-4o & Gemini-1.5 Pro

    Authors: Zheyuan Zhang, Monica Dou, Linkai Peng, Hongyi Pan, Ulas Bagci, Boqing Gong

    IEEE ICCV 2025

    Publication Year: 2025

    [Paper]
    [Data]

  2. Order-aware Interactive Segmentation

    Authors: Bin Wang, Anwesa Choudhuri, Meng Zheng, Zhongpai Gao, Benjamin Planche, Andong Deng, Qin Liu, Terrence Chen, Ulas Bagci, Ziyan Wu

    ICLR 2025

    Publication Year: 2025

    [Paper]
    [Code]

  2. Eye Tracking in Cardiology

    Authors: Vedat Cicek, Ulas Bagci

    Current Opinion in Biomedical Engineering

    Publication Year: 2025

    [Paper]

  2. Unsupervised Clustering Successfully Predicts Prognosis in NSCLC Brain Metastasis Cohorts

    Authors: Emre Uysal, Gorkem Durak, Ayse Kotek Sedef, Ulas Bagci, Tanju Berber, Necla Gurdal, Berna Akkus Yildirim

    Diagnostics

    Publication Year: 2025

    [Paper]

  2. Large Scale MRI Collection and Segmentation of Cirrhotic Liver

    Authors: Debesh Jha, Onkar Kishor Susladkar, Vandan Gorade, Elif Keles, Matthew Antalek, Deniz Seyithanoglu, Timurhan Cebeci, Halil Ertugrul Aktas, Gulbiz Dagoglu Kartal, Sabahattin Kaymakoglu, Sukru Mehmet Erturk, Yuri Velichko, Daniela P. Ladner, Amir A. Borhani, Alpay Medetalibeyoglu, Gorkem Durak & Ulas Bagci

    Nature Scientific Data - 2025

    Publication Year: 2025

    [Paper]
    [Code]
    [Data]

  2. Generative AI and unstructured audio data for precision public health

    Authors: James Anibal, Adam Landa, Hang Nguyen, Veronica Daoud, Tram Le, Hannah Huth, Miranda Song, Alec Peltekian, Ashley Shin, Lindsey Hazen, Anna Christou, Jocelyne Rivera, Robert Morhard, Jacqueline Brenner, Ulas Bagci, Ming Li, Yael Bensoussan, David Clifton & Bradford Wood

    Nature (npj) Health Systems - 2025

    Publication Year: 2025

    [Paper]

  2. Eyes Tell the Truth: GazeVal Highlights Shortcomings of Generative AI in Medical Imaging

    Authors: David Wong*, Bin Wang*, Gorkem Durak, Marouane Tliba, Akshay Chaudhari, Aladine Chetouani, Ahmet Enis Cetin, Cagdas Topel, Nicolo Gennaro, Camila Lopes Vendrami, Tugce Agirlar Trabzonlu, Amir Ali Rahsepar, Laetitia Perronne, Matthew Antalek, Onural Ozturk, Gokcan Okur, Andrew C Gordon, Ayis Pyrros, Frank H Miller, Amir Borhani, Hatice Savas, Eric Hart, Drew Torigian, Jayaram K Udupa, Elizabeth Krupinski, Ulas Bagci

    CVPRW 2025

    Publication Year: 2025

    [Paper]

  2. MedDelinea: Scalable and Efficient Medical Image Segmentation via Controllable Diffusion Transformers

    Authors: Gayatri Deshmukh, Onkar Kishor Susladkar, Debesh Jha, Elif Keles, Halil Ertugrul Aktas, Daniela P Ladner, Amir A Borhani, Gorkem Durak, Ulas Bagci

    MIDL 2025

    Publication Year: 2025

    [Paper]

  2. Machine learning based clinical decision tool to predict acute kidney injury and survival in therapeutic hypothermia treated neonates

    Authors: Elif Keles, Syed Yaseen Ali, Pia Wintermark, Pieter Annaert, Floris Groenendaal, Suzan Şahin, Mehmet Yekta Öncel, Didem Armangil, Esin Koc, Malcolm R. Battin, Alistair J. Gunn, Adam Frymoyer, Valerie Chock, Djalila Mekahli, John van den Anker, Anne Smits, Karel Allegaert & Ulas Bagci

    Nature Scientific Reports - 2025

    Publication Year: 2025

    [Paper]
    [Code]
    [Data]

  2. Negative Predictive Value of a Prostate MRI in Black Men: Implications for Biopsy Decision-Making

    Authors: Sarah Sandlow, Samuel Carbunaru, Zequn Sun, Bernice Ofori, Yingzhe Liu, Eric Li, Courtney MP Hollowell, Patricia Vidal, Kent T Perry Jr, Hiten D Patel, Ryan W Dobbs, David D Casalino, Cecil G Wood III, Anugayathri Jawahar, Channa Amarasekera, Jeanne M Horowitz, Frank H Miller, Emrah Gumusgoz, Ximing J Yang, Bonnie Choy, Frances Manosca, Ulas Bagci, Edward M Schaeffer, Peter Gann, Dustin D French, Ashley E Ross, Shilajit D Kundu, Adam B Murphy

    Journal of Urology - 2025

    Publication Year: 2025

    [Paper]

  2. Anatomy-derived 3D Aortic Hemodynamics Using Fluid Physics–informed Deep Learning

    Authors: Haben Berhane, Anthony Maroun, David Dushfunian, Justin Baraboo, Gabriela Martinez, Tyler Jacobson, Ulas Bagci, Bradley D. Allen, Michael Markl

    Radiology - 2025

    Publication Year: 2025

    [Paper]
    [Data]

  2. Validating polyp and instrument segmentation methods in colonoscopy through Medico 2020 and MedAI 2021 Challenges

    Authors: Debesh Jha, Vanshali Sharma, Debapriya Banik, Debayan Bhattacharya, Kaushiki Roy, Steven A. Hicks, Nikhil Kumar Tomar, Vajira Thambawita, Adrian Krenzer, Ge-Peng Ji, Sahadev Poudel, George Batchkala, Saruar Alam, Awadelrahman M. A. Ahmed, Quoc-Huy Trinh, Zeshan Khan, Tien-Phat Nguyen, Shruti Shrestha, Sabari Nathan, Jeonghwan Gwak, Ritika K. Jha, Zheyuan Zhang, Alexander Schlaefer, Debotosh Bhattacharjee, M.K. Bhuyan, Pradip K. Das, Deng-Ping Fan, Sravanthi Parsa, Sharib Ali, Michael A. Riegler, Pål Halvorsen, Thomas De Lange, Ulas Bagci

    Medical Image Analysis - 2025

    Publication Year: 2025

    [Paper]

  2. Physics-Informed Autoencoder for Prostate Tissue Microstructure Profiling with Hybrid Multidimensional MRI

    Authors: Batuhan Gundogdu, Aritrick Chatterjee, Milica Medved, Ulas Bagci, Gregory S Karczmar, Aytekin Oto

    Radiology AI - 2025

    Publication Year: 2025

    [Paper]

  2. Advances in MRI in the Evaluation of Chronic Pancreatitis and the less Common Forms of Pancreatitis

    Authors: Camila Lopes Vendrami, Nancy Hammond, Pardeep Mittal, Rajesh N. Keswani, Ulas Bagci, Frank H. Miller

    Advances in Clinical Radiology - 2025

    Publication Year: 2025

    [Paper]
    [Data]

  2. Radiologic and Clinical Correlates of Long-Term Post-COVID-19 Pulmonary Sequelae

    Authors: Gorkem Durak, Kaan Akin, Okan Cetin, Emre Uysal, Halil Ertugrul Aktas, Ulku Durak, Ahmet Yasin Karkas, Naci Senkal, Hatice Savas, Atadan Tunaci, Alpay Medetalibeyoglu, Ulas Bagci and Sukru Mehmet Erturk

    Journal of Clinical Medicine - 2025

    Publication Year: 2025

    [Paper]

  2. Pediatric Pancreas Segmentation from MRI Scans with Deep Learning

    Authors: Elif Keles, Merve Yazol, Gorkem Durak, Ziliang Hong, Halil Ertugrul Aktas, Zheyuan Zhang, Linkai Peng, Onkar Susladkar, Necati Guzelyel, Oznur Leman Boyunaga, Cemal Yazici, Mark Lowe, Aliye Uc, Ulas Bagci

    Pancreatology - 2025

    Publication Year: 2025

    [Paper]
    [Code]
    [Data]

  2. Position of artificial intelligence in healthcare and future perspective

    Authors: Vedat Cicek and Ulas Bagci

    Artificial Intelligence in Medicine (Elsevier) - 2025

    Publication Year: 2025

    [Paper]

  2. Gaze-Guided Medical Image Segmentation: A Training-Free Approach Using SAM Foundation Model

    Authors: Giulia Gabriëlla Pötgens, Rutger Hendrix, Cian Scannell, Ulas Bagci, Concetto Spampinato, Federica Proietto Salanitri

    IEEE EMBC 2025

    Publication Year: 2025

    [Paper]

  2. Shifts in Doctors’ Eye Movements Between Real and AI-Generated Medical Images

    Authors: David Wong, Bin Wang, et al.

    ETRA 2025

    Publication Year: 2025

    [Paper]

  2. Impact of AI-Generated ADC Maps on Computer-Aided Diagnosis of Prostate Cancer: A Feasibility Study

    Authors: Kutsev B. Ozyoruk, Stephanie A. Harmon, Enis C. Yilmaz, David G. Gelikman, Ulas Bagci, Benjamin D. Simon, Maria J. Merino, Rosina Lis, Sandeep Gurram, Bradford J. Wood, Peter A. Pinto, Peter L. Choyke , Baris Turkbey

    Academic Radiology (Elsevier) - 2025

    Publication Year: 2025

    [Paper]
    [Data]

  2. Current applications of radiomics in the assessment of tumor microenvironment of hepatocellular carcinoma

    Authors: Junghwa Choi et al

    Abdominal Radiology - 2025

    Publication Year: 2025

    [Paper]
    [Data]

  2. Uncertainty-Guided Cross Attention Ensemble Mean Teacher for Semi-supervised Medical Image Segmentation

    Authors: Meghana Karri, Amit Soni Arya, Koushik Biswas, Nicolo Gennaro, Vedat Cicek, Gorkem Durak, Yury Velichko, Ulas Bagci

    IEEE/CVF WACV 2025

    Publication Year: 2025

    [Paper]
    [Code]

  2. Frequency-Domain Refinement of Vision Transformers for Robust Medical Image Segmentation under Degradation

    Authors: Sanaz Karimijafarbigloo, Sina Ghorbani Kolahi, Reza Azad, Ulas Bagci, Dorit Merhof

    IEEE/CVF WACV 2025

    Publication Year: 2025

  2. Optimizing Neural Network Effectiveness via Non-monotonicity Refinement

    Authors: Koushik Biswas, Amit Reza, Meghana Karri, Debesh Jha, Hongyi Pan, Nikhil Tomar, Aliza Subedi, Smriti Regmi, Ulas Bagci

    IEEE/CVF WACV 2025

    Publication Year: 2025

  2. Rosette Trajectory MRI Reconstruction with Vision Transformers

    Authors: M. Fikret Yalcinbas, Cengizhan Ozturk, Onur Ozyurt, Uzay E. Emir and Ulas Bagci

    Tomography - 2025

    Publication Year: 2025

    [Paper]

  2. A Review of Ultrasonic Testing and Evaluation Methods with Applications in Civil NDT/E

    Authors: Inad Alqurashi, Ninel Alver, Ulas Bagci and Fikret Necati Catbas

    Journal of Nondestructive Evaluation

    Publication Year: 2025

    [Paper]
    [Data]

  2. Enhancing Shared Decision-Making in Cardiology with Artificial Intelligence

    Authors: Vedat Cicek and Ulas Bagci

    Balkan Med J - 2025

    Publication Year: 2025

    [Paper]

  2. Radiomics-Based Machine Learning Models Improve Acute Pancreatitis Severity Prediction

    Authors: Ahmet Yasin Karkas et al.

    AI - 2025

    Publication Year: 2025

    [Paper]

  2. Ethical Framework for Responsible Foundational Models in Medical Imaging

    Authors: Debesh Jha , Gorkem Durak , Abhijit Das , Jasmer Sanjotra , Onkar Susladkar , Suramyaa Sarkar , Ashish Rauniyar , Nikhil Kumar Tomar , Linkai Peng , Sirui Li , Koushik Biswas , Ertugrul Aktas , Elif Keles , Matthew Antalek , Zheyuan Zhang , Bin Wang , Xin Zhu , Hongyi Pan , Deniz Seyithanoglu , Alpay Medetalibeyoglu , Vanshali Sharma , Vedat Çiçek , Amir Ali Rahsapar , Rutger Hendrix , A. Enis Cetin , Bulent Aydogan , Mohamed Abazeed , Frank H Miller , Rajesh N Keswani , Hatice Savas , Sachin Jambawalikar , Daniela P Ladner , Amir Ali Borhani , Concetto Spampinato , Michael B Wallace and Ulas Bagci

    Frontiers in Medicine

    Publication Year: 2025

    [Paper]

  2. Paradoxical Response to Neoadjuvant Therapy in Undifferentiated Pleomorphic Sarcoma: Increased TumorSize on MRI Associated with Favorable Pathology

    Authors: Mariam H. Goreish

    Cancers

    Publication Year: 2025

    [Paper]

  2. Predicting Risk of Pulmonary Fibrosis Formation in PASC Patients

    Authors: Wanying Dou, Gorkem Durak, Koushik Biswas, Ziliang Hong, Andrea Mia Bejar, Elif Keles, Kaan Akin, Sukru Mehmet Erturk, Alpay Medetalibeyoglu, Marc Sala, Alexander Misharin, Hatice Savas, Mary Salvatore, Sachin Jambawalikar, Drew Torigian, Jayaram K. Udupa, Ulas Bagci

    IEEE ACDSA 2025

    Publication Year: 2025

    [Paper]

  2. Delta Radiomics and Tumor Size: A New Predictive Radiomics Model for Chemotherapy Response in Liver Metastases from Breast and Colorectal Cancer

    Authors: Nicolo Gennaro et al.

    Tomography

    Publication Year: 2025

    [Paper]

  2. Vision transformer for efficient chest x-ray and gastrointestinal image classification

    Authors: Smriti Regmi et al

    SPIE Medical Imaging 2025

    Publication Year: 2025

    [Paper]

  2. A Reverse Mamba Attention Network for Pathological Liver Segmentation

    Authors: Jun Zeng, Debesh Jha, Ertugrul Aktas, Elif Keles, Alpay Medetalibeyoglu, Matthew Antalek, Robert Lewandowski, Daniela Ladner, Amir A. Borhani, Gorkem Durak, Ulas Bagci

    IEEE ICECCME 2025

    Publication Year: 2025

    [Paper]

  2. OUTCOMES OF PANCREAS CANCER DETECTED DURING PANCREAS CYST SURVEILLANCE IS SIMILAR TO INCIDENT CANCER

    Authors: Andrea Mia Bejar

    DDW 2025

    Publication Year: 2025

  2. RISK FACTORS FOR DEVELOPMENT OF PANCREAS ADENOCARCINOMA AFTER INITIAL DIAGNOSIS OF INCIDENTAL PANCREAS CYST

    Authors: Andrea Mia Bejar et al

    DDW 2025

    Publication Year: 2025

  2. A Conceptual Framework for Applying Ethical Principles of AI to Medical Practice

    Authors: Debesh Jha et al

    Bioengineering

    Publication Year: 2025

    [Paper]

  2. Liver Cirrhosis Stage Estimation from MRI with Deep Learning

    Authors: Jun Zeng, Debesh Jha, Ertugrul Aktas, Elif Keles, Alpay Medetalibeyoglu, Matthew Antalek, Federica Proietto Salanitri, Amir Borhani, Daniela Ladner, Gorkem Durak, Ulas Bagci

    IEEE EMBC 2025

    Publication Year: 2025

    [Paper]
    [Code]
    [Data]

  2. Conditional Visuo-Textual Prompt Learning for Medical Image Analysis

    Authors: Raffaele Mineo et al

    IEEE ISBI 2025

    Publication Year: 2025

    [Paper]

  2. Is Long Range Sequential Modeling Necessary for Colorectal Tumor Segmentation? 

    Authors: Abhishek Srivastava, et al.

    IEEE ISBI 2025

    Publication Year: 2025

  2. Adaptive Aggregation Weights for Federated Segmentation of Pancreas MRI

    Authors: Hongyi Pan, Gorkem Durak, Zheyuan Zhang, Yavuz Taktak, Elif Keles, Halil Ertugrul Aktas, Alpay Medetalibeyoglu, Yury Velichko, Concetto Spampinato, Ivo Schoots, Marco J Bruno, Rajesh N Keswani, Pallavi Tiwari, Candice Bolan, Tamas Gonda, Michael G Goggins, Michael B Wallace, Ziyue Xu, Ulas Bagci

    IEEE ISBI 2025

    Publication Year: 2025

    [Paper]

  2. IPMN Risk Assessment under Federated Learning Paradigm

    Authors: Hongyi Pan, Ziliang Hong, Gorkem Durak, Elif Keles, Halil Ertugrul Aktas, Yavuz Taktak, Alpay Medetalibeyoglu, Zheyuan Zhang, Yury Velichko, Concetto Spampinato, Ivo Schoots, Marco J Bruno, Pallavi Tiwari, Candice Bolan, Tamas Gonda, Frank Miller, Rajesh N Keswani, Michael B Wallace, Ziyue Xu, Ulas Bagci

    IEEE ISBI 2025

    Publication Year: 2025

    [Paper]

  2. A New Logic For Pediatric Brain Tumor Segmentation

    Authors: Max Bengtsson, Elif Keles, Gorkem Durak, Syed Anwar, Yuri S Velichko, Marius G Linguraru, Angela J Waanders, Ulas Bagci

    IEEE ISBI 2025

    Publication Year: 2025

    [Paper]

  2. Long-Term Follow-up of Patients Recovering From Moderate-To-Severe COVID-19

    Authors: Gorkem Durak et al

    INTERNATIONAL CONFERENCE AMERICAN THORACIC SOCIETY (ATS) 2025

    Publication Year: 2025

  2. Radiomic Features Detect Interstitial Lung Disease in Patients with Systemic Sclerosis

    Authors: Alec Peltekian et al

    International Conference American Thoracic Society (ATS) 2025

    Publication Year: 2025

  2. Predictive strength of inflammatory scores for in-hospital mortality in infective endocarditis

    Authors: Vedat Cicek, Almina Erdem, Sahhan Kilic, Burak Tay, Mustafa Kamil Yemis, Solen Taslicukur, Mustafa Oguz, Ahmet Oz, Murat Selcuk, Tufan Cinar, Ulas Bagci

    Herz

    Publication Year: 2025

    [Paper]

  2. A New Risk Prediction Model for the Assessment of Myocardial Injury in Elderly Patients Undergoing Non-Elective Surgery

    Authors: Cicek, V., Babaoglu, M., Saylik, F., Yavuz, S., Mazlum, A. F., Genc, M. S., Altinisik, H., Oguz, M., Korucu, B. C., Hayiroglu, M. I., Cinar, T., & Bagci, U.

    Journal of Cardiovascular Development and Disease (2025)

    Publication Year: 2025

    [Paper]

  2. A New Model for Prediction of Myocardial Injury of Non-Elective Surgery in Elderly

    Authors: Vedat Cicek et al

    ACC (2025)

    Publication Year: 2025

    [Paper]

  2. Towards Synergistic Deep Learning Models for Volumetric Cirrhotic Liver Segmentation in MRIs

    Authors: Vandan Gorade, Onkar Susladkar, Gorkem Durak, Elif Keles, Ertugrul Aktas, Timurhan Cebeci, Alpay Medetalibeyoglu, Daniela P. Ladner, Debesh Jha, and Ulas Bagci

    SPIE Medical Imaging 2025

    Publication Year: 2025

    [Paper]

  2. MDNet: Multi-Decoder Network for Abdominal CT Organs Segmentation

    Authors: Debesh Jha, Nikhil Tomar, Koushik Biswas, Gorkem Durak, Matthew Antalek, Zheyuan Zhang, Bin Wang, Md Mostafijur Rahman, Hongyi Pan, Alpay Medetalibeyoglu, Abhijit Das, Yury Velichko, Daniela P. Ladner, Amir A. Borhani, Ulas Bagci

    IEEE ICASSP 2025

    Publication Year: 2025

    [Paper]

  2. Frequency-Based Federated Domain Generalization for Polyp Segmentation

    Authors: Hongyi Pan, Debesh Jha, Koushik Biswas, Ulas Bagci

    IEEE ICASSP 2025

    Publication Year: 2025

    [Paper]

  2. Transformer-Enhanced Iterative Feedback Mechanism for Polyp Segmentation

    Authors: Nikhil Tomar, Debesh Jha, Koushik Biswas, Ulas Bagci

    IEEE ICASSP 2025

    Publication Year: 2025

    [Paper]

  2. Uncertainty-Guided Coarse-to-Fine Tumor Segmentation with Anatomy-Aware Post-Processing

    Authors: Ilkin Sevgi Isler, David Mohaisen, Curtis Lisle, Damla Turgut, Ulas Bagci

    IEEE ACDSA 2025

    Publication Year: 2025

    [Paper]

  2. Bridging the Gap in Pancreatic Imaging: A New Era of AI-Powered Precision

    Authors: Gorkem Durak and Ulas Bagci

    Journal of the Pancreas - 2025

    Publication Year: 2025

    [Paper]

  2. Healthy-to-Patients Deep learning for Automated Left Atrial Segmentation and Function analysis from Short-Axis Cine CMR 

    Authors: M. Elbayumi et al.

    SCMR 2025

    Publication Year: 2025

    [Paper]

  2. HCC Detection in the Wild: AI models for automated MRI HCC detection.

    Authors: Matthew Antalek, Robert Lewandowski, and Ulas Bagci

    SIR Annual Scientific Meeting - 2025

    Publication Year: 2025

  2. Large-scale multi-center CT and MRI segmentation of pancreas with deep learning (PanSegNet)

    Authors: Zheyuan Zhang, Elif Keles, Gorkem Durak, Yavuz Taktak, Onkar Susladkar, Vandan Gorade, Debesh Jha, Asli C. Ormeci, Alpay Medetalibeyoglu, Lanhong Yao, Bin Wang, Ilkin Sevgi Isler, Linkai Peng, Hongyi Pan, Camila Lopes Vendrami, Amir Bourhani, Yury Velichko, Boqing Gong, Concetto Spampinato, Ayis Pyrros, Pallavi Tiwari, Derk C.F. Klatte, Megan Engels, Sanne Hoogenboom, Candice W. Bolan, Emil Agarunov, Nassier Harfouch, Chenchan Huang, Marco J. Bruno, Ivo Schoots, Rajesh N. Keswani, Frank H. Miller, Tamas Gonda, Cemal Yazici, Temel Tirkes, Baris Turkbey, Michael B. Wallace, Ulas Bagci

    MEDICAL IMAGE ANALYSIS - 2025

    Publication Year: 2025

    [Paper]
    [Code]
    [Data]

  2. DiffBoost: Enhancing Medical Image Segmentation via Text-Guided Diffusion Model

    Authors: Zheyuan Zhang, Lanhong Yao, Bin Wang, Debesh Jha, Gorkem Durak, Elif Keles, Alpay Medetalibeyoglu, Ulas Bagci

    IEEE Transactions on Medical Imaging

    Publication Year: 2025

    [Paper]
    [Code]

  2. SynergyNet: Bridging the Gap Between Discrete and Continuous Representations for Precise Medical Image Segmentation.

    Authors: Gorade, Vandan, et al.

    WACV 2024

    Publication Year: 2024

    [Paper]

  2. Beyond Self-Attention: Deformable Large Kernel Attention for Medical Image Segmentation.

    Authors: Azad, Reza, et al.

    WACV 2024

    Publication Year: 2024

    [Paper]
    [Code]

  2. Estimation of Acoustic Emission Arrival Time in Concrete Structures Using Convolutional Neural Network

    Authors: Omair Inderyas, Ninel Alver, Aydin Kaya, Ulas Bagci

    Proceedings of the 42nd IMAC (2024)

    Publication Year: 2024

    [Paper]

  2. Foundational AI Models and Modern Medical Practice 

    Authors: Alpay Medetalibeyoglu, Yury Velichko, Eric Hart, MD, Ulas Bagci.

    British Journal of Radiology AI

    Publication Year: 2024

    [Paper]

  2. Variational Quantum Neural Network for Modeling and Solving Heat and Mass Transfer Problems Occurring in Electric Contact Phenomena

    Authors: Merey M. Sarsengeldin; Zeeshan Ahmad; Ulas Bagci

    IEEE 69th Holm Conference on Electrical Contacts (HOLM) (2024)

    Publication Year: 2024

    [Paper]

  2. 𝗔𝗱𝘃𝗮𝗻𝗰𝗲𝘀 𝗳𝗼𝗿 𝗠𝗮𝗻𝗮𝗴𝗶𝗻𝗴 𝗣𝗮𝗻𝗰𝗿𝗲𝗮𝘁𝗶𝗰 𝗖𝘆𝘀𝘁𝗶𝗰 𝗟𝗲𝘀𝗶𝗼𝗻𝘀: 𝗜𝗻𝘁𝗲𝗴𝗿𝗮𝘁𝗶𝗻𝗴 𝗜𝗺𝗮𝗴𝗶𝗻𝗴 𝗮𝗻𝗱 𝗔𝗜 𝗜𝗻𝗻𝗼𝘃𝗮𝘁𝗶𝗼𝗻𝘀

    Authors: Deniz Seyithanoglu, Gorkem Durak, Elif Keles, Alpay Medetalibeyoglu, Ziliang Hong, Zheyuan Zhang, Yavuz B. Taktak, Timurhan Cebeci, Pallavi Tiwari, Yuri S. Velichko, Cemal Yazici, Temel Tirkes, Frank H. Miller, Rajesh N. Keswani, Concetto Spampinato, Michael B. Wallace and Ulas Bagci

    Cancers (2024)

    Publication Year: 2024

    [Paper]

  2. Predictive Value of Inflammatory Scores for Left Atrium Thrombosis in Ischemic Stroke Without Atrial Fibrillation

    Authors: Vedat Cicek et al.

    Medicina - 2024

    Publication Year: 2024

    [Paper]

  2. Predicting Short-Term Mortality in Patients With Acute Pulmonary Embolism With Deep Learning

    Authors: Vedat Cicek et al.,

    CIRCULATION JOURNAL

    Publication Year: 2024

    [Paper]
    [Data]

  2. Mortality Prediction of Pulmonary Embolism Patients with Deep Learning and XGBoost

    Authors: Vedat Cicek et al.

    IEEE ICECCME 2024

    Publication Year: 2024

    [Paper]

  2. Machine learning for prognostic prediction in coronary artery disease with SPECT data: a systematic review and meta-analysis

    Authors: Vedat Cicek, et al.

    EJNMMI Research

    Publication Year: 2024

    [Paper]

  2. Evidential Federated Learning for Skin Lesion Image Classification

    Authors: Rutger Hendrix et al

    ICPR 2024

    Publication Year: 2024

    [Paper]

  2. AI-powered contrast-free cardiovascular magnetic resonance imaging for myocardial infarction

    Authors: Vedat Cicek and Ulas Bagci

    FRONTIERS CARDIOVASCULAR MEDICINE

    Publication Year: 2024

    [Paper]

  2. CT Liver Segmentation via PVT-based Encoding and Refined Decoding

    Authors: Jha, Debesh, et al.

    IEEE ISBI 2024 (Oral)

    Publication Year: 2024

    [Paper]
    [Code]

  2. Deep learning based automated pancreas segmentation and volumetry measurement in patients with acute pancreatitis

    Authors: Elif Keles, Gorkem Durak, Ziliang Hong, Jasson Barrios, Paya Sarraf,Matthew Antalek, Zheuyan Zhang, Brian Boulay, Ashley Vareedayah, Brian Layden,Temel Tirkes, Cemal Yazici, Ulas Bagci

    APA/JPS/CAP/IAP 2024 Annual Meeting

    Publication Year: 2024

    [Paper]
  1. Optimizing Synthetic Data for Enhanced Pancreatic Tumor Segmentation

  2. Optimizing Synthetic Data for Enhanced Pancreatic Tumor Segmentation

    Authors: Linkai Peng, Zheyuan Zhang, Gorkem Durak, Frank H. Miller, Alpay Medetalibeyoglu, Michael B. Wallace, Ulas Bagci

    MICCAI AIPAD 2024

    Publication Year: 2024

    [Paper]

  2. Novel Momentum-Based Deep Learning Techniques for Medical Image Classification and Segmentation

    Authors: AKoushik Biswas, Ridal Pal, Shaswat Patel, Debesh Jha, Meghana Karri, Amit Reza, Gorkem Durak, Alpay Medetalibeyoglu, Matthew Antalek, Yury Velichko, Daniela Ladner, Amir Borhani, Ulas Bagci

    MICCAI MLMI 2024

    Publication Year: 2024

    [Paper]
  1. Classification of Endoscopy and Video Capsule Images using Hybrid Model

  2. Classification of Endoscopy and Video Capsule Images using Hybrid Model

    Authors: Aliza Subedi, Smriti Regmi, Nisha Regmi, Bhumi Bhusal, Ulas Bagci, Debesh Jha

    MICCAI CaPTion 2024

    Publication Year: 2024

    [Paper]

  2. Practical and Ethical Considerations for Generative AI in Medical Imaging

    Authors: Debesh Jha, Ashish Rauniyar, Desta Haileselassie Hagos, Vanshali Sharma,Nikhil Kumar Tomar, Zheyuan Zhang, Ilkin Isler, Gorkem Durak, Michael Wallace, Cemal Yazici, Tyler Berzin, Koushik Biswas, Ulas Bagci

    MICCAI EPIMI 2024

    Publication Year: 2024

    [Paper]
  1. AI-ADC: Channel and Spatial Attention-Based Contrastive Learning to Generate ADC Maps from T2W MRI for Prostate Cancer Detection

  2. AI-ADC: Channel and Spatial Attention-Based Contrastive Learning to Generate ADC Maps from T2W MRI for Prostate Cancer Detection

    Authors: Ozyoruk et al.

    Journal of Personalized Medicine

    Publication Year: 2024

    [Paper]

  2. Advancing Pediatric Brain Tumor Diagnosis: A Deep Learning Approach to Multiclass Segmentation in CBTN data: Feasibility Study

    Authors: Max Bengtsson, et al

    CBTN (Children Brain Tumor Network) Summit 2024

    Publication Year: 2024

    [Paper]

  2. The association of volumetric changes and disease severity with endocrine dysfunction following acute pancreatitis

    Authors: Elif Keles, Gorkem Durak,Jasson Barrios, Ziliang Hong, Paya Sarraf,Matthew Antalek, Zheuyan Zhang, Brian Boulay, Ashley Vareedayah, Brian Layden,Temel Tirkes, Ulas Bagci,Cemal Yazici,

    APA/JPS/CAP/IAP 2024 Annual Meeting

    Publication Year: 2024

    [Paper]

  2. Patients with acute pancreatitis have significant decline in pancreas volume over time 

    Authors: Jasson Barrios, Elif Keles, Gorkem Durak, Ziliang Hong, Paya Sarraf,Matthew Antalek, Zheuyan Zhang, Brian Boulay, Ashley Vareedayah, Brian Layden,Temel Tirkes,Ulas Bagci,Cemal Yazici

    APA/JPS/CAP/IAP 2024 Annual Meeting

    Publication Year: 2024

    [Paper]

  2. EyeSee: Integrating Deep Learning for ImageAnalysis

    Authors: Bin Wang and Ulas Bagci

    Medical Image Perception Society (MIPS) XX 2024.

    Publication Year: 2024

    [Paper]

  2. The Role of CO-RADS Scoring System in the Diagnosis of COVID-19 Infection and its Correlation with Clinical Signs

    Authors: Şenol Çomoğlu, Sinan Öztürk, Ahmet Topçu, Fatma Kulalı, Aydın Kant, Resul Sobay, Mustafa Arslan, Hanife Şeyda Ülgür, Uğur Kostakoğlu, Eyüp Veli Küçük, Hanife Nur Karakoç, Merve Çağlar, Gülsüm Uzuğ, Ulas Bagci , Ömer Faruk Özkan, Gürdal Yılmaz

    Curr Med Imaging - 2022

    Publication Year: 2022

    [Paper]

  2. Early stage lung cancer detection from speech sounds in natural environments.

    Authors: Haydar Ankishan, et al.

    Biomedical Signal Processing and Control

    Publication Year: 2024

    [Paper]

  2. Deformable Capsules: A Novel Capsule Network Architecture for Object Detection.”

    Authors: Naji Khosravan, Rodney LaLonde, Ulas Bagci

    Advanced Intelligent Systems (Willey)

    Publication Year: 2024

    [Paper]
    [Code]

  2. Utilizing Chest Radiographs (CXRS) for Kidney Failure Prognostication and Early Risk Stratification with Prospective and External validation

    Authors: Theo Dapamede et al.

    RSNA 2024

    Publication Year: 2024

  2. MRI Intensity Standardization via Prototype Learning fro Improved Oncological Analysis of Heterogenous Datasets

    Authors: Meghana Karri, et al.

    RSNA 2024

    Publication Year: 2024

  2. Limited Utility of RECIST 1.1 in Predicting Pathologic Response to Neoadjuvant Radiotherapy in Myxoid Liposarcoma

    Authors: Yuri Velichko et al.

    RSNA 2024

    Publication Year: 2024

  2. Increased Tumor Size on MRI Predicts Pathological Response to Neoadjuvant Radiotherapy in Undifferentiated Pleomorphic Sarcoma

    Authors: Yuri Velichko et al.

    RSNA 2024

    Publication Year: 2024

  2. EyeSee: Real Radiology Room Experience with Eye Tracking and Deep Learning

    Authors: Bin Wang, et al.

    RSNA 2024

    Publication Year: 2024

  2. Detection of Peri-Pancreatic Edema Using Deep Learning and Radiomics

    Authors: ZIliang Hong, et al.

    RSNA 2024

    Publication Year: 2024

  2. Enhanced Prediction of Lung Cancer Risk from Imaging Biomarkers in Chests Radiographs: An External Validation Study

    Authors: Theo Dapamede et al.

    RSNA 2024

    Publication Year: 2024

  2. Imaging Assessment of Response in Soft Tissue Sarcoma After Neoadjuvant Radiotheraphy

    Authors: Yuri Velichko et al.

    RSNA 2024

    Publication Year: 2024

  1. Domain Generalization With Correlated Style Uncertainty

  2. Domain Generalization with Correlated Style Uncertainty.

    Authors: Zhang, Zheyuan, et al.

    WACV 2024

    Publication Year: 2024

    [Paper]
    [Code]

  2. INCODE: Implicit Neural Conditioning With Prior Knowledge Embeddings

    Authors: Kazerouni, Amirhossein, et al.

    WACV 2024

    Publication Year: 2024

    [Paper]
    [Code]

  2.  GazeGNN: A Gaze-Guided Graph Neural Network for Chest X-Ray Classification.

    Authors: Wang, Bin, et al.

    WACV 2024

    Publication Year: 2024

    [Paper]
    [Code]

  2. Harmonized Spatial and Spectral Learning for Robust and Generalized Medical Image Segmentation

    Authors: Gorade, Vandan, et al.

    ICPR 2024

    Publication Year: 2024

    [Paper]

  2. Domain Generalization with Fourier Transform and Soft Thresholding.

    Authors: Pan, Hongyi, et al.

    IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) 2024

    Publication Year: 2024

    [Paper]
    [Code]

  2. Explainable Transformer Prototypes for Medical Diagnoses.

    Authors: Demir, Ugur, et al.

    IEEE ISBI 2024

    Publication Year: 2024

    [Paper]
    [Code]

  2. THE BOSTON ERCP DATASET: A VIDEO DATASET FOR ADVANCED ENDOSCOPY

    Authors: Mark E. Geissler, et al.

    DDW 2024

    Publication Year: 2024

  2. Deep Learning-Based Detection and Classification of Bone Lesions on Staging Computed Tomography in Prostate Cancer: A Development Study

    Authors: Belue, Mason J., et al.

    Academic Radiology - 2024

    Publication Year: 2024

    [Paper]
    [Code]

  2. SAM-EG: Segment Anything Model with Egde Guidance framework for efficient Polyp Segmentation

    Authors: Quoc-Huy Trinh, Hai-Dang Nguyen, Bao-Tram Nguyen Ngoc, Debesh Jha, Ulas Bagci, Minh-Triet Tran

    BMVC 2024

    Publication Year: 2024

    [Paper]

  2. PGDS: Pose-Guidance Deep Supervision for Mitigating Clothes-Changing in Person Re-Identification

    Authors: Quoc-Huy Trinh, Nhat-Tan Bui, Dinh-Hieu Hoang, Phuoc-Thao Vo Thi, Hai-Dang Nguyen, Debesh Jha, Ulas Bagci, Ngan Le, Minh-Triet Tran

    IEEE AVSS 2024

    Publication Year: 2024

    [Paper]

  2. Predicting Short Term Mortality In Patients With Acute Pulmonary Embolism With Deep Learning

    Authors: V Cicek, et al.

    ICNC-CT 2024

    Publication Year: 2024

  1. Evaluation of pan-Immuno-Inflammation value for In-hospital mortality in acute pulmonary embolism patients

  2. Evaluation of pan-Immuno-Inflammation value for In-hospital mortality in acute pulmonary embolism patients

    Authors: Çiçek, Vedat, et al.

    Revista de Investigacion Clinica -2024

    Publication Year: 2024

    [Paper]
  1. PP-SAM: Perturbed Prompts for Robust Adaption of Segment Anything Model for Polyp Segmentation

  2. PP-SAM: Perturbed Prompts for Robust Adaption of Segment Anything Model for Polyp Segmentation

    Authors: Md M. Rahman, M. Munir, D. Jha, U. Bagci, R. Marculescu

    CVPR DEF-AI-MIA 2024

    Publication Year: 2024

    [Paper]
    [Code]

  2. AI-Powered Road Network Prediction with Multi-Modal Data

    Authors: Necip Gengec, Engin Tari, Ulas Bagci

    Earth Science Informatics - 2024

    Publication Year: 2024

    [Paper]
    [Code]
    [Data]

  2. Methods of artificial intelligence-assisted infrastructure assessment using mixed reality systems.

    Authors: Karaaslan, Enes, et al.

    US Patent - 2024

    Publication Year: 2024

    [Paper]

  2. HCA-Net: Hierarchical Context Attention Network for Intervertebral Disc Semantic Labeling

    Authors: Bozorgpour, Afshin, et al.

    IEEE ISBI 2024

    Publication Year: 2024

    [Paper]
    [Code]

  2. Federated Learning for Medical Applications: A Taxonomy, Current Trends, Challenges, and Future Research Directions

    Authors: Rauniyar, Ashish, et al.

    IEEE Internet of Things Journal

    Publication Year: 2024

    [Paper]
  1. ENHANCING LIVER SEGMENTATION OUTCOMES WITH MSFORMER-BASED ARTIFICIAL INTELLIGENCE SYSTEM

  2. Enhancing Liver Segmentation Outcomes with MSFormer-based AI System

    Authors: Jha, Debesh, et al.

    DDW 2024

    Publication Year: 2024

  1. Adaptive Smooth Activation for Improved Disease Diagnosis and Organ Segmentation from Radiology Scans

  2. Adaptive Smooth Activation for Improved Disease Diagnosis and Organ Segmentation from Radiology Scans

    Authors: Koushik Biswas, Debesh Jha, Nikhil Kumar Tomar, Gorkem Durak, Alpay Medetalibeyoglu, Matthew Antalek, Yury Velichko, Daniela Ladner, Amir Bohrani, Ulas Bagci

    MICCAI 2024

    Publication Year: 2024

    [Paper]
  1. Rethinking Intermediate Layers design in Knowledge Distillation for Kidney and Liver Tumor Segmentation

  2. Rethinking Intermediate Layers design in Knowledge Distillation for Kidney and Liver Tumor Segmentation

    Authors: Gorade, Vandan, et al.

    IEEE ISBI 2024

    Publication Year: 2024

    [Paper]
    [Code]
  1. ENHANCING COLONOSCOPY OUTCOMES WITH DAPODET-BASED AI FOR REAL-TIME SESSILE SERRERATED POLYP DETECTION.

  2. Enhancing Colonoscopy Outcomes with DAPODET-based AI for Real-time sessile serrated Polyp Detection

    Authors: Das, Abhijit, et al.

    DDW 2024

    Publication Year: 2024

  2. Healthy-to-Patients Domain-Adaptive Deep Learning for Time-Resolved Segmentation of Left Atrium in Short-Axis Cine MRI Images

    Authors: M. Elbayumi, et al.

    ISMRM 2024

    Publication Year: 2024

  2. PAM-UNet: Shifting Attention on Region of Interest in Medical Images

    Authors: A. Das, D. Jha, V. Gorade, K. Biswas, H. Pan, Z. Zhang, D. P. Ladner, Y. Velichko, A. Borhani, and U. Bagci

    IEEE EBMC 2024

    Publication Year: 2024

    [Paper]

  2. Prediction of MRI-Induced Power Absorption in Patients with DBS Leads

    Authors: Yalcin Tur, et al.

    IEEE EMBS 2024

    Publication Year: 2024

    [Paper]
  1. FuseNet- Self-Supervised Dual-Path Network for Medical Image Segmentation

  2. FuseNet: Self-Supervised Dual-Path Network for Medical Image Segmentation

    Authors: Kazerouni, Amirhossein, et al.

    IEEE ISBI 2024

    Publication Year: 2024

    [Paper]
    [Code]

  2.  Leveraging Unlabeled Data for 3D Medical Image Segmentation through Self-Supervised Contrastive Learning

    Authors: Karimijafarbigloo, Sanaz, et al.

    IEEE ISBI 2024

    Publication Year: 2024

    [Paper]
    [Code]
  1. A review of prognostic prediction of coronary artery disease patients with myocardial perfusion scintigraphy and artificial intelligence

  2. A review of prognostic prediction of coronary artery disease patients with myocardial perfusion scintigraphy and artificial intelligence

    Authors: V. Cicek, et al.

    ICNC-CT 2024

    Publication Year: 2024

    [Paper]

  2. ControlPolypNet: Towards Controlled Colon Polyp Synthesis for Improved Polyp Segmentation

    Authors: V. Sharma, A. Kumar, D. Jha, M.K. Bhuyan, P. Das, U. Bagci.

    CVPR DCAMI 2024

    Publication Year: 2024

    [Paper]
    [Code]

  2. A Probabilistic Hadamard U-Net for MRI Bias Field Correction

    Authors: Zhu, Xin, et al.

    MICCAI MLMI 2024

    Publication Year: 2024

    [Paper]
  1. TransRUPNet for Improved Out-of-Distribution Generalization in Polyp Segmentation

  2. TransRUPNet for Improved Out-of-Distribution Generalization in Polyp Segmentation

    Authors: D. Jha, N. K. Tomar, D. Bhattacharya, K. Biswas, U. Bagci

    IEEE EBMC 2024

    Publication Year: 2024

    [Paper]
    [Code]

  2. Detection of Peri-Pancreatic Edema using Deep Learning and Radiomics Techniques

    Authors: Z. Hong, D. Jha, K. Biswas, Z. Zhang, Y. Velichko, C. Yazici, T. Tirkes, A. Borhani, B. Turkbey, A. Medetalibeyoglu, G. Durak, U. Bagci

    IEEE EBMC 2024

    Publication Year: 2024

    [Paper]
    [Code]
    [Data]

  2. Multichannel Orthogonal Transform-Based Perceptron Layers for Efficient ResNets

    Authors: H. Pan, E. Hamdan, X. Zhu, S. Atici and A. E. Cetin

    IEEE Transactions on Neural Networks and Learning Systems

    Publication Year: 2024

    [Paper]
    [Code]

  2. COVID-19 Detection from Respiratory Sounds with Hierarchical Spectrogram Transformers

    Authors: Aytekin, Idil, et al.

    IEEE JBHI - 2024

    Publication Year: 2024

    [Paper]

  2. TransNetR: Transformer-based Residual Network for Polyp Segmentation with Multi-Center Out-of-Distribution Testing

    Authors: Debesh Jha, Nikhil Kumar Tomar, Vanshali Sharma, Ulas Bagci

    MIDL 2023

    Publication Year: 2023

    [Paper]
    [Code]

  2. The past, current, and future of neonatal intensive care units with artificial intelligence: a systematic review

    Authors: Keles, Elif, and Ulas Bagci

    npj Digital Medicine - 2023

    Publication Year: 2023

    [Paper]

  2. Ensemble Learning with Residual Transformer for Brain Tumor Segmentation

    Authors: Yao, Lanhong, et al.

    IEEE ISBI 2023

    Publication Year: 2023

    [Paper]

  2. DilatedSegNet: A Deep Dilated Segmentation Network for Polyp Segmentation

    Authors: Tomar, NK., Jha, D., Bagci, U.

    SPIE Medical Imaging 2023

    Publication Year: 2023

    [Paper]
    [Code]

  2. Artificial Intelligence and Infectious Disease Imaging

    Authors: Chu, Winston T., et al.

    The Journal of Infectious Diseases - 2023

    Publication Year: 2023

    [Paper]

  2. A review of deep learning and radiomics approaches for pancreatic cancer diagnosis from medical imaging

    Authors: Yao, Lanhong; Zhang, Zheyuan; Keles, Elif; Yazici, Cemal; Tirkes, Temel; Bagci, Ulas

    Current Opinion in Gastroenterology

    Publication Year: 2023

    [Paper]

  2. TransResU-Net: Transformer based ResU-Net for Real-Time Colonoscopy Polyp Segmentation

    Authors: Tomar, Nikhil Kumar, et al.

    IEEE EMBC 2023

    Publication Year: 2023

    [Paper]
    [Code]

  2. Monkeypox Diagnosis with Interpretable Deep Learning

    Authors: Ahsan, Md. Manjurul, Ali, Md. Shahin, Hassan, Md. Mehedi, Abdullah, Tareque Abu, Gupta, Kishor Datta, Bagci, Ulas, Kaushal, Chetna, Soliman, Naglaa F.

    IEEE Access - 2023

    Publication Year: 2023

    [Paper]

  2. Radiomics Boosts Deep Learning Model for IPMN Classification

    Authors: Yao L, Zhang Z, Demir U, Keles E, Vendrami C, Agarunov E, Bolan C, Schoots I, Bruno M, Keswani R, Miller F, Gonda T, Yazici C, Tirkes T, Wallace M, Spampinato C, Bagci U.

    MICCAI MLMI 2023

    Publication Year: 2023

    [Paper]

  2. A Fully Automatic AI System for Pancreas Segmentation from Multicenter MRI Scans

    Authors: Zheyuan Zhang, et al.

    DDW 2023

    Publication Year: 2023

  2. RUPNet: residual upsampling network for real-time polyp segmentation

    Authors: Tomar, Nikhil Kumar, Ulas Bagci, and Debesh Jha.

    SPIE Medical Imaging 2023

    Publication Year: 2023

    [Paper]

  2. Laplacian-Former: Overcoming the Limitations of Vision Transformers in Local Texture Detection

    Authors: Azad, Reza, et al

    MICCAI 2023

    Publication Year: 2023

    [Paper]

  2. Self-supervised Semantic Segmentation: Consistency over Transformation

    Authors: S Karimijafarbigloo, R Azad, et al.

    ICCV 2023

    Publication Year: 2023

    [Paper]
    [Code]

  2. Gastrointestinal Disease Diagnosis with Hybrid Model of Capsules and CNNs

    Authors: Sarsengeldin, Merey, et al.

    IEEE EIT - 2023

    Publication Year: 2023

    [Paper]

  2. Deep Learning Algorithms for Pancreas Segmentation from Radiology Scans: A Review

    Authors: Zhang, Zheyuan, et al.

    Advances in Clinical Radiology - 2023

    Publication Year: 2023

    [Paper]

  2. GastroVision: A Multi-class Endoscopy Image Dataset for Computer Aided Gastrointestinal Disease Detection

    Authors: Jha, Debesh, et al.

    ICML Workshop 2023

    Publication Year: 2023

    [Paper]
    [Code]

  2. AI in Clinical Medicine: A Practical Guide for Healthcare Professionals

    Authors: Michael F. Byrne (Editor), Nasim Parsa (Co-Editor), Alexandra T. Greenhill (Co-Editor), Daljeet Chahal (Co-Editor), Omer Ahmad (Co-Editor), Ulas Bagci (Co-Editor).

    WILEY - 2023

    Publication Year: 2023

    [Paper]

  2. Multi-Institutional Large-Scale Validation of 8 Methods for Automatic Knee MRI Segmentation for Use in Clinical Trials

    Authors: Dam, E. B., et al.

    Osteoarthritis and Cartilage 2022

    Publication Year: 2022

    [Paper]

  2. Real-time multi-class helmet violation detection using few-shot data sampling technique and yolov8

    Authors: Aboah, Armstrong, et al.

    CVPRW 2023

    Publication Year: 2023

    [Paper]

  2. Deepsegmenter: Temporal action localization for detecting anomalies in untrimmed naturalistic driving videos

    Authors: Aboah, Armstrong, et al.

    CVPRW 2023

    Publication Year: 2023

    [Paper]
    [Code]

  2. An Efficient Multi-Scale Fusion Network for 3D Organ at Risk (OAR) Segmentation

    Authors: Srivastava, Abhishek, et al.

    IEEE EMBC 2023

    Publication Year: 2023

    [Paper]

  2. Self-Supervised Learning for Organs At Risk and Tumor Segmentation with Uncertainty Quantification

    Authors: Ilkin Isler, Debesh Jha, Curtis Lisle, et al.

    IEEE ICECCME 2023

    Publication Year: 2023

    [Paper]

  2. GazeSAM: Interactive Image Segmentation with Eye Gaze and Segment Anything Model

    Authors: Wang, Bin, et al.

    NeurIPS Workshop 2023

    Publication Year: 2023

    [Paper]

  2. Relational reasoning network for anatomical landmarking

    Authors: Torosdagli, Neslisah, et al.

    Journal of Medical Imaging - 2023

    Publication Year: 2023

    [Paper]

  2. AI Empowered Automatic Volume Delineation of Liver from CT Scans for Diagnostic Workflow

    Authors: Ugur Demir, Zheyuan Zhang, Bin Wang, et al.

    DDW 2023

    Publication Year: 2023

  2. Deep Learning Models in the Classification of Intraductal Papillary Mucinous Neoplasms with Visual Explanation Methods to Highlight Areas of Interest for Algorithm Decision Process

    Authors: Engels, M. M., et al.

    Gastroenterology 2022

    Publication Year: 2022

    [Paper]

  2. Enhancing organ at risk segmentation with improved deep neural networks

    Authors: Isler, Ilkin, et al.

    SPIE Medical Imaging 2022

    Publication Year: 2022

    [Paper]

  2. Transformer-based Generative Adversarial Network for Liver Segmentation

    Authors: Demir, Ugur, et al.

    International Conference on Image Analysis and Processing (ICIAP) 2022

    Publication Year: 2022

    [Paper]
  1. Dynamic Linear Transformer for 3D Biomedical Image Segmentation

  2. Dynamic Linear Transformer for 3D Biomedical Image Segmentation

    Authors: Zhang, Z., & Bagci, U.

    MICCAI MLMI

    Publication Year: 2022

    [Paper]

  2. Out of Distribution Detection, Generalization, and Robustness Triangle with Maximum Probability Theorem

    Authors: Marvasti, Amir Emad, et al.

    IEEE ICECCME 2022

    Publication Year: 2022

    [Paper]

  2. Automatic Polyp Segmentation with Multiple Kernel Dilated Convolution Network

    Authors: Tomar, Nikhil Kumar, et al.

    IEEE 35th International Symposium on Computer-Based Medical Systems (CBMS)

    Publication Year: 2022

    [Paper]

  2. Musculoskeletal MR Image Segmentation with Artificial Intelligence

    Authors: Keles, E., Irmakci, I., Bagci, U.

    Advances in Clinical Radiology

    Publication Year: 2022

    [Paper]

  2. Detecting COVID-19 from respiratory sound recordings with transformers

    Authors: Aytekin, Idil, et al.

    SPIE Medical Imaging 2022

    Publication Year: 2022

    [Paper]

  2. Multi-Contrast MRI Segmentation Trained on Synthetic Images

    Authors: Irmakci, I., Unel, Z. E., Ikizler-Cinbis, N., & Bagci, U.

    IEEE EMBC 2022

    Publication Year: 2022

    [Paper]

  2. No-Reference Image Quality Assessment Of T2-Weighted Magnetic Resonance Images In Prostate Cancer Patients.

    Authors: Masoudi, S., Harmon, S., Mehralivand, S., Lay, N., Bagci, U., Wood, B.J., Pinto, P.A., Choyke, P. and Turkbey, B. (2021).

    IEEE ISBI - 2021

    Publication Year: 2021

    [Paper]

  2. Design and Rationale for the Use of Magnetic Resonance Imaging Biomarkers to Predict Diabetes After Acute Pancreatitis in the Diabetes Related to Acute Pancreatitis and Its Mechanisms Study: From the Type 1 Diabetes in Acute Pancreatitis Consortium

    Authors: Tirkes T., et al,

    Pancreas 2022

    Publication Year: 2022

    [Paper]

  2. An automatic segmentation framework for computer-assisted renal scintigraphy

    Authors: Rahimi, A., Hosntalab, M., Babapour, F., Amoui, M., Bagci, U.

    Medical & Biological Engineering & Computing (Springer)

    Publication Year: 2022

    [Paper]

  2. Neural Transformers for Intraductal Papillary Mucosal Neoplasms (IPMN) Classification in MRI images

    Authors: Proietto Salanitri, F. et al.

    IEEE EMBC 2022

    Publication Year: 2022

    [Paper]
    [Code]
  1. Video Capsule Endoscopy Classification using Focal Modulation Guided Convolutional Neural Network

  2. Video Capsule Endoscopy Classification using Focal Modulation Guided Convolutional Neural Network

    Authors: Srivastava, Abhishek, et al.

    IEEE 35th International Symposium on Computer-Based Medical Systems (CBMS) 2022

    Publication Year: 2022

    [Paper]
  1. Video Analytics in Elite Soccer: A Distributed Computing Perspective

  2. Video Analytics in Elite Soccer: A Distributed Computing Perspective

    Authors: Jha, Debesh, et al.

    IEEE 12th Sensor Array and Multichannel Signal Processing Workshop (SAM)

    Publication Year: 2022

    [Paper]
    [Code]

  2. TGANet: Text-guided attention for improved polyp segmentation

    Authors: Tomar, N. K., Jha, D., Bagci, U., & Ali, S.

    MICCAI 2022

    Publication Year: 2022

    [Paper]

  2. The Role of CO-RADS Scoring System in the Diagnosis of COVID-19 Infection and its Correlation with Clinical Signs

    Authors: Çomoglu, S., Öztürk, S., Topçu, A., Kulali, F., Kant, A., Sobay, R., … & Yilmaz, G.

    Current Medical Imaging - 2022

    Publication Year: 2022

    [Paper]

  2. Hierarchical 3D Feature Learning for Pancreas Segmentation.

    Authors: Proietto Salanitri, F., Bellitto, G., Irmakci, I., Palazzo, S., Bagci, U., & Spampinato, C.

    MICCAI MLMI - 2021

    Publication Year: 2021

    [Paper]

  2. Interpretable Deep Model for Predicting Gene-Addicted Non-Small-Cell Lung Cancer in CT Scans

    Authors: Pino, Carmelo, Simone Palazzo, Francesca Trenta, et al.

    IEEE ISBI

    Publication Year: 2021

    [Paper]

  2. Information Bottleneck Attribution for Visual Explanations of Diagnosis and Prognosis

    Authors: Demir, U., Irmakci, I., Keles, E., Topcu, A., Xu, Z., Spampinato, C., … & Bagci, U.

    MICCAI MLMI - 2021

    Publication Year: 2021

    [Paper]

  2. Missed Diagnosis of Pancreatic Ductal Adenocarcinoma Detection Using Deep Convolutional Neural Network.

    Authors: Hoogenboom, S. A., Ravi, K., Engels, M. M., Irmakci, I., Keles, E., Bolan, C. W., … & Bagci, U

    Gastroenterology - 2021

    Publication Year: 2021

    [Paper]

  2. Deep Recurrent-Convolutional Model for Automated Segmentation of Craniomaxillofacial CT Scans.

    Authors: Murabito, Francesca, Simone Palazzo, F. Proietto Salanitri, et al.

    ICPR - 2021 (2020th conference published in 2021 due to covid)

    Publication Year: 2021

    [Paper]

  2. Deep Multi-stage Model for Automated Landmarking of Craniomaxillofacial CT Scans

    Authors: Palazzo, Simone, Giovanni Bellitto, Luca Prezzavento, et al.

    IEEE ICPR -2021 (2020 conference was published in 2021 due to covid)

    Publication Year: 2021

    [Paper]

  2. Quick Guide on Radiology Image Pre-processing for Deep Learning Applications in Prostate Cancer Research.

    Authors: Masoudi, Samira, Stephanie AA Harmon, Sherif Mehralivand, et al.

    Journal of Medical Imaging - 2021

    Publication Year: 2021

    [Paper]

  2. Predicting RF Heating of Conductive Leads During Magnetic Resonance Imaging at 1.5 T: A Machine Learning Approach.

    Authors: Zheng, C., Chen, X., Nguyen, B. T., et al.

    IEEE EMBC 2021

    Publication Year: 2021

    [Paper]

  2. The International Workshop on Osteoarthritis Imaging Knee MRI Segmentation Challenge: A Multi-Institute Evaluation and Analysis Framework on a Standardized Dataset

    Authors: Desai, A. D., Caliva, F., Iriondo,

    Radiology AI - 2021

    Publication Year: 2021

    [Paper]

  2. Attention-guided Analysis of Infrastructure Damage with Semi-supervised Deep Learning.

    Authors: Karaaslan, E., Bagci, U., & Catbas, F. N.

    Automation in Construction - 2021

    Publication Year: 2021

    [Paper]

  2. Morphometric and Functional Brain Connectivity Differentiates Chess Masters From Amateur Players

    Authors: RaviPrakash, H., Anwar, S. M., Biassou, N. M., & Bagci, U.

    Frontiers in Neuroscience - 2021

    Publication Year: 2021

    [Paper]

  2. Capsules for Biomedical Image Segmentation

    Authors: LaLonde, R., Xu, Z., Irmakci, I., Jain, S., & Bagci, U.

    Medical image analysis - 2021

    Publication Year: 2021

    [Paper]

  2. Maximum Probability Theorem: A Framework for Probabilistic Machine Learning

    Authors: Marvasti, A. E., Marvasti, E. E., Bagci, U., & Foroosh, H

    IEEE Transactions on Artificial Intelligence - 2021

    Publication Year: 2021

    [Paper]

  2. A Novel Decision Support System for Long-Term Management of Bridge Networks

    Authors: Karaaslan, E., Bagci, U., & Catbas, N

    Applied Sciences, 11(13), 5928.

    Publication Year: 2021

    [Paper]

  2. Deep Learning Based Staging of Bone Lesions from Computed Tomography Scans

    Authors: Masoudi, S., Mehralivand, S., Harmon, S.A., et al.

    IEEE Access - 2021

    Publication Year: 2021

    [Paper]

  2. Machine Learning-Based Prediction of MRI-Induced Power Absorption in the Tissue in Patients With Simplified Deep Brain Stimulation Lead Models

    Authors: Vu, J., Nguyen, B. T., Bhusal, B., Baraboo, J., Rosenow, J., Bagci, U., … & Golestanirad, L.

    IEEE Transactions on Electromagnetic Compatibility - 2021

    Publication Year: 2021

    [Paper]

  2. A Machine Learning-Based Prediction of the Micropapillary/Solid Growth Pattern in Invasive Lung Adenocarcinoma with Radiomics

    Authors: He, B., Song, Y., Wang, L., et al.

    Translational Lung Cancer Research - 2021

    Publication Year: 2021

    [Paper]

  2. Brain Tumor Survival Prediction using Radiomics Features

    Authors: Yousaf, S., Anwar, S, RaviPrakash, H., Bagci, U.

    MICCAI RNO-AI 2020

    Publication Year: 2020

    [Paper]

  2. Adipose Tissue Segmentation in Unlabeled Abdomen MRI Using Cross Modality Domain Adaptation

    Authors: Masoudi, S., Razi, A., Gatlin, J., Turkbey, B., Bagci, U.

    IEEE EMBC 2020

    Publication Year: 2020

    [Paper]

  2. AI for the detection of COVID19 pneumonia on chest CT using multinational datasets.

    Authors: Stephanie A. Harmon, Thomas H. Sanford, Sheng Xu, et al.

    Nature Communications, 2020.

    Publication Year: 2020

    [Paper]

  2. Variational Capsule Encoder

    Authors: RaviPrakash, H., Anwar, SM., Bousquet, C., Bagci, U.

    ICPR 2020

    Publication Year: 2020

    [Paper]

  2. Instance-level Microtubule Tracking

    Authors: Masoodi, S., Razi, A., Wright, C., Gatlin, J., Bagci, U.

    IEEE Transactions on Medical Imaging - 2020

    Publication Year: 2020

    [Paper]

  2. Diagnosing Colorectal Polyps in the Wild with Capsule Networks

    Authors: LaLonde, R., Kandel, P., Spampinato, C., Wallace, M, Bagci, U.

    IEEE ISBI 2020

    Publication Year: 2020

    [Paper]

  2. Overall Survival Prediction in Gliomas Using Region-Specific Radiomic Features

    Authors: Shaheen, A., Bagci, U., Mohy-ud-Din, H.

    MICCAI RNO-AI - 2020

    Publication Year: 2020

    [Paper]

  2. Integrating eye tracking and speech recognition accurately annotates MR brain images for deep learning: proof of principle

    Authors: Stember, Joseph N., Haydar Celik, David Gutman, Nathaniel Swinburne, Robert Young, Sarah Eskreis-Winkler, Andrei Holodny, Sachin Jambawalikar , Bradford J Wood , Peter D Chang, Elizabeth Krupinski, Ulas Bagci

    Radiology: Artificial Intelligence - 2020

    Publication Year: 2020

    [Paper]

  2. Encoding High-Level Visual Attributes in Capsules for Explainable Medical Diagnoses

    Authors: LaLonde, R., Torigian, D., Bagci, U.

    MICCAI 2020

    Publication Year: 2020

    [Paper]

  2. State-of-the-art in brain tumor segmentation and current challenges

    Authors: Yousaf, Sobia, Harish RaviPrakash, Syed Muhammad Anwar, Nosheen Sohail, and Ulas Bagci.

    MICCAI RNO-AI 2020

    Publication Year: 2020

    [Paper]

  2. Semi-supervised deep learning for multi-tissue segmentation from multi-contrast MRI.

    Authors: Anwar, Syed Muhammad, Ismail Irmakci, Drew A. Torigian, Sachin Jambawalikar, Georgios Z. Papadakis, Can Akgun, Jutta Ellermann, Mehmet Akcakaya, and Ulas Bagci.

    Journal of Signal Processing Systems - 2020

    Publication Year: 2020

    [Paper]

  2. Deep Convolutional Neural Networks Based Classification of Alzheimer’s Disease Using MRI Data

    Authors: Nawaz, A., Anwar, S., Liaqat, R., Iqbal, J., Bagci, U.

    IEEE INMIC 2020

    Publication Year: 2020

    [Paper]

  2. The impact of COVID-19 on African American communities in the United States

    Authors: Cyrus, Elena, Rachel Clarke, Dexter Hadley, Zoran Bursac, Mary Jo Trepka, Jessy G. Dévieux, Ulas Bagci

    Health Equity - 2020

    Publication Year: 2020

    [Paper]

  2. Deep Learning Provides Exceptional Accuracy to ECoG-based Functional Language Mapping for Epilepsy Surgery

    Authors: RaviPrakash, H., Korostenskaja, M., Castillo, E., Lee, KH., Salinas, CM., Baumgartner, J., Scampinatoe, C., Bagci, U.

    Frontiers in Neuroscience -

    Publication Year: 2020

    [Paper]

  2. Analysis of Video Retinal Angiography with Deep Learning and Eulerian Magnification

    Authors: Saha, S., LaLonde R., Carmack, A., Foroosh, H., Olson, J.C., Shaikh, S., Bagci, U.

    Frontiers in Computer Science - 2020

    Publication Year: 2020

    [Paper]

  2. AI in Gastroenterology. Current State of Play and Potential. How will it affect our practice and when?

    Authors: Hoogenboom, S., Bagci, U., Wallace, MB.

    Techniques in Gastrointestinal Endoscopy - 2020

    Publication Year: 2020

    [Paper]

  2. Development of a Device-to-Image Registration Free Needle Guide for Magnetic Resonance Imaging-Guided Targeted Prostate Biopsy

    Authors: Pankaj Kulkarni, Sakura Sikander, Pradipta Biswas, Sumit Laha, Heather Cornnell, Jeremy R Burt, Ulas Bagci, Sang-Eun Song.

    Journal of Medical Devices - 2020

    Publication Year: 2020

    [Paper]

  2. EEG based classification of long-term stress using psychological labeling

    Authors: Saeed, Sanay Muhammad Umar, Syed Muhammad Anwar, Humaira Khalid, Muhammad Majid, and Ulas Bagci

    Sensors - 2020

    Publication Year: 2020

    [Paper]

  2. PET/CT and PET/MRI in Ophthalmic Oncology

    Authors: Kalemaki MS, Karantanas AH, Exarchos D, Detorakis ET, Zoras O, Marias K, Millo C, Bagci U, Pallikaris I, Stratis A, Karatzanis I, Perisinakis K, Koutentakis P, Kontadakis GA, Spandidos DA, Tsatsakis A, Papadakis GZ.

    International Journal of Oncology - 2020

    Publication Year: 2020

    [Paper]

  2. Proceedings from the first global artificial intelligence in gastroenterology and endoscopy Summit

    Authors: Parasa, S., Wallace, M., Bagci, U., Antonino, M., Berzin, T., Byrne, M., Celik, H., Farahani, K., Golding, M., Gross, S., and Jamali, V.

    Gastrointestinal Endoscopy - 2020

    Publication Year: 2020

    [Paper]

  2. Emotion Classification in Response to Tactile Enhanced Multimedia Using Frequency Domain Features of Brain Signals

    Authors: Arsalan, A., Majid, M., Anwar, SM., Bagci, U.

    IEEE EMBC 2019

    Publication Year: 2019

    [Paper]

  2. Classification of Perceived Human Stress Using Psychological Signals

    Authors: Arsalan, A., Majid, M., Anwar, SM., Bagci, U.

    IEEE EMBC 2019

    Publication Year: 2019

    [Paper]

  2. A Survey on Recent Advancements for AI-Enabled Radiomics in Neuro-Oncology

    Authors: Anwar, S., Tooba, A., Rafique, K., RaviPrakash, H., Mohy-ud-din, H., Bagci, U.

    MICCAI RNO-AI 2019

    Publication Year: 2019

    [Paper]

  2. Deep Learning for Musculoskeletal Image Analysis

    Authors: Irmakci, I., Anwar, S., Torigian, D., Bagci, U.

    IEEE ASILOMAR 2019 (invited article)

    Publication Year: 2019

    [Paper]

  2. Cross-modality Knowledge Transfer for Prostate Segmentation from CT Scans

    Authors: Liu, Y., Khosravan, N., Liu, Y., Stember, J., Bagci, U., Jambawalikar, S.

    MICCAI DART 2019

    Publication Year: 2019

    [Paper]

  2. Weakly Supervised Segmentation by A Deep Geodesic Prior.

    Authors: Mortazi, A., Khosravan, N., Torigian, DA., Kurugol, S., Bagci, U.

    MICCAI MLMI 2019

    Publication Year: 2019

    [Paper]

  2. PAN: Projective Adversarial Network for Medical Image Segmentation

    Authors: Khosravan, N., Mortazi, A., Wallace, M., Bagci, U.

    MICCAI 2019

    Publication Year: 2019

    [Paper]

  2. INN: Inflated Neural Networks for IPMN Diagnosis

    Authors: LaLonde, R., Tanner, I., Nikiforaki, K., Papadakis, GZ., Kandel, P., Bolan, CW., Wallace, M., Bagci, U.

    MICCAI 2019

    Publication Year: 2019

    [Paper]

  2. Lung and Pancreatic Tumor Characterization in the Deep Learning Era: Novel Supervised and Unsupervised Learning Approaches

    Authors: Hussein, S., Kandel, MM., Bolan, CW., Wallace, MB., Bagci, U.

    IEEE Transactions on Medical Imaging - 2019

    Publication Year: 2019

    [Paper]

  2. A Collaborative Computer Aided Diagnosis (C-CAD) System with Eye Tracking, Sparse Attentional Model, and Deep Learning

    Authors: Khosravan, N., Celik, H., Turkbey, B., Jones, E., Wood, B., Bagci, U.

    Medical Image Analysis - 2019

    Publication Year: 2019

    [Paper]

  2. Deep Geodesic Learning for Segmentation and Anatomical Landmarking

    Authors: Neslisah Torosdagli, Denise K. Liberton, Payal Verma, Murat Sincan, Janice S. Lee, Ulas Bagci

    IEEE Transactions on Medical Imaging - 2019

    Publication Year: 2019

    [Paper]

  2. Artificial Intelligence Assisted Infrastructure Assessment Using Mixed Reality Systems

    Authors: Karaaslan, E., Bagci, U., and Catbas, F.N.

    Journal of Transportation Research - 2019

    Publication Year: 2019

    [Paper]

  2. Eye-Tracking for Deep Learning Segmentation Using Convolutional Neural Networks

    Authors: Stember, JN., … , Jambawalikar, S., Bagci, U.

    Journal of Imaging Informatics in Medicine- 2019

    Publication Year: 2019

    [Paper]

  2. 18F-NaF PET/CT imaging in fibrous dysplasia of bone: implications for evaluation of disease activity and treatment

    Authors: Papadakis, GZ., … , and Boyce, AM.

    Journal of Bone and Mineral Research - 2019

    Publication Year: 2019

    [Paper]

  2. Deep Learning to Classify Intraductal Papillary Mucinous Neoplasms Using Magnetic Resonance Imaging

    Authors: Hurtado, S. Hussein, … , and M. Wallace.

    Pancreas - 2019

    Publication Year: 2019

    [Paper]

  2. Quality Assurance of Computer-Aided Detection and Diagnosis in Colonoscopy

    Authors: Vinsard, DG., … , Wallace, MB.

    Gastrointestinal Endoscopy - 2019

    Publication Year: 2019

    [Paper]

  2. RETOUCH-The Retinal OCT Fluid Detection and Segmentation Benchmark and Challenge

    Authors: Bugunovic, H., … , Gerendas, BS., Klaver, C., Sánchez, CI., Schmidt-Erfurth, U.

    IEEE Transactions on Medical Imaging - 2019

    Publication Year: 2019

    [Paper]

  2. Computerized Analysis of Brain MR parameters dynamics in young patients with Cushing-Syndrome – a case control study

    Authors: Tirosh, A., RaviPrakash, H., … , Bagci, U., Stratakis, CA.

    The Journal of Clinical Endocrinology and Metabolism - 2019

    Publication Year: 2019

    [Paper]

  2. Lung Imaging and CADx. Chapter 14: How Deep Learning is Changing the Landscape of Lung Cancer Diagnosis

    Authors: Hussein, S., and Bagci, U.

    CRC Press (invited), 2019

    Publication Year: 2019

    [Paper]

  2. Deep Learning for Functional Brain Connectivity: Are We There Yet?

    Authors: RaviPrakash, R., Watane, A., Jambawalikar, S., and Bagci, U.

    Deep Learning and CNN for Medical Image Computing - 2019 (Invited)

    Publication Year: 2019

    [Paper]

  2. Gold Standard for Epilepsy/Tumor Surgery Coupled with Deep Learning Offers Independence to a Promising Functional Mapping Modality

    Authors: Korostenskaja, M., RaviPrakash, H., Bagci, U., … , Elsayed, M., and Castillo, E.

    Brain-Computer Interface Research, A State-of-the-Art Summary 7, Springer, 2019.

    Publication Year: 2019

    [Paper]

  2. Artificial Intelligence as Another Set of Eyes in Breast Cancer Diagnosis

    Authors: Anwar, SM, and Bagci, U.

    Journal of Medical Artificial Intelligence - 2019

    Publication Year: 2019

    [Paper]

  2. Prognostic Utility of F-18-NaF PET/CT Imaging for Fractures in Patients with Fibrous Dysplasia of Bone.

    Authors: Papadakis, GZ., Manikis, GC, Karantanas, AH., Marias, K., Bagci, U., Florenzano, P., Collins, MT, Boyce, AM.

    EJNMMI - 2019

    Publication Year: 2019

  2. MRI-guided, Transperineal Prostate Biopsy Using Fixed Coordinate Needle Guide: Initial Feasibility Study.

    Authors: Kulkarni, P., Laha, S., Sikander, S., Cornell, H., Bagci, U., Burt, J., and Song, SS.

    Design of Medical Devices Conference, 2019.

    Publication Year: 2019

    [Paper]

  2. F-18-NaF Uptake by Fibrous Dysplasia Bone Lesions is Positively Associated with Bone Turnover Markers (BTMs)

    Authors: Papadakis, GZ., Manikis, GC., Karantanas, AH., Marias, K., Bagci, U., Florenzano, P., Collins, MT, Boyce, AM.

    EJNMMI - 2019

    Publication Year: 2019

    [Paper]

  2. Colorectcal Polyp Diagnosis With Contemporary Artificial Intelligence

    Authors: Kandel, P., Lalonde, R., Ciofoaia, V., Wallace, M., Bagci, U.

    Gastrointestinal Endoscopy - 2019

    Publication Year: 2019

    [Paper]

  2. Brown Adipose Tissue Activation Detected by Artificial Intelligence Assisted Radiomics: An Early Biomarker for Pancreatic Ductal Adenocarcinoma (PDAC)

    Authors: Rodriguez, AC., Sharma, A., Tanner, I., Kandel, P., Lalonde, R., Livingston, D., Manoj, J., Raimondo, M., Wallace, M., Bagci, U.

    Gastroenterology - 2019

    Publication Year: 2019

    [Paper]

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