Publications

DiffBoost: enhancing medical image segmentation via text-guided diffusion model

Zheyuan Zhang, Lanhong Yao, Bin Wang, Debesh Jha, Gorkem Durak, Elif Keles, Alpay Medetalibeyoglu, Ulas Bagci

DuetMatch: harmonizing semi-supervised brain MRI segmentation via decoupled branch optimization

Thanh-Huy Nguyen, Hoang-Thien Nguyen, Vi Vu, Ba-Thinh Lam, Phat Huynh, Tianyang Wang, Xingjian Li, Ulas Bagci, Min Xu

Vedat Cicek and Ulas Bagci

Debesh Jha , Gorkem Durak , Abhijit Das , Jasmer Sanjotra , Onkar Susladkar , Suramyaa Sarkar , Ashish Rauniyar , Nikhil Kumar Tomar , Linkai Peng , Sirui Li , Koushik Biswas , Ertugrul Aktas , Elif Keles , Matthew Antalek , Zheyuan Zhang , Bin Wang , Xin Zhu , Hongyi Pan , Deniz Seyithanoglu , Alpay Medetalibeyoglu , Vanshali Sharma , Vedat Çiçek , Amir Ali Rahsapar , Rutger Hendrix , A. Enis Cetin , Bulent Aydogan , Mohamed Abazeed , Frank H Miller , Rajesh N Keswani , Hatice Savas , Sachin Jambawalikar , Daniela P Ladner , Amir Ali Borhani , Concetto Spampinato , Michael B Wallace and Ulas Bagci

Eye tracking in cardiology

Vedat Cicek, Ulas Bagci

Eyes tell the truth: GazeVal highlights shortcomings of generative AI in medical imaging

David Wong*, Bin Wang*, Gorkem Durak, Marouane Tliba, Akshay Chaudhari, Aladine Chetouani, Ahmet Enis Cetin, Cagdas Topel, Nicolo Gennaro, Camila Lopes Vendrami, Tugce Agirlar Trabzonlu, Amir Ali Rahsepar, Laetitia Perronne, Matthew Antalek, Onural Ozturk, Gokcan Okur, Andrew C Gordon, Ayis Pyrros, Frank H Miller, Amir Borhani, Hatice Savas, Eric Hart, Drew Torigian, Jayaram K Udupa, Elizabeth Krupinski, Ulas Bagci

Foundational tumor segmentation models

Sirui Li, Linkai Peng, Halil Ertugrul Aktas, Zheyuan Zhang, Gorkem Durak, Ulas Bagci,

Frequency-based federated domain generalization for polyp segmentation

Hongyi Pan, Debesh Jha, Koushik Biswas, Ulas Bagci

Frequency-domain refinement of vision transformers for robust medical image segmentation under degradation

Sanaz Karimijafarbigloo, Sina Ghorbani Kolahi, Reza Azad, Ulas Bagci, Dorit Merhof

Gaze-guided medical image segmentation: a training-free approach using SAM foundation model

Giulia Gabriëlla Pötgens, Rutger Hendrix, Cian Scannell, Ulas Bagci, Concetto Spampinato, Federica Proietto Salanitri

Generative AI and foundation models in radiology: applications, opportunities, and potential challenges

Neda Tavakoli, Zahra Shakeri, Vrushab Gowda, Konrad Samsel, Arash Bedayat, Ahmadreza Ghasemiesfe, Ulas Bagci, Albert Hsiao, Tim Leiner, James Carr, Daniel Kim, Amir Ali Rahsepar

Generative AI and unstructured audio data for precision public health

James Anibal, Adam Landa, Hang Nguyen, Veronica Daoud, Tram Le, Hannah Huth, Miranda Song, Alec Peltekian, Ashley Shin, Lindsey Hazen, Anna Christou, Jocelyne Rivera, Robert Morhard, Jacqueline Brenner, Ulas Bagci, Ming Li, Yael Bensoussan, David Clifton & Bradford Wood

GMAT: grounded multi-agent clinical description generation for text encoder in vision-language MIL for whole slide image classification

Ngoc Bui Lam Quang, Nam Le Nguyen Binh, Thanh-Huy Nguyen, Le Thien Phuc Nguyen, Quan Nguyen, Ulas Bagci

Matthew Antalek, Robert Lewandowski, and Ulas Bagci

Healthy-to-patients deep learning for automated left atrial segmentation and function analysis from short-axis cine CMR

M. Elbayumi et al.

Hybrid intelligence in oncology: comparing human experts and large language models in interpreting complex cancer treatment guidelines

Berna Yildirim, Baver Bunyamin Tutun, Gorkem Durak, Emre Batuhan Yildirim, Emre Uysal, Sukru Mehmet Erturk, Ulas Bagci,

Imaging biomarkers for pancreatic adenocarcinoma risk stratification in incidental pancreatic cysts: a multi-hospital cohort study

Andrea Bejar, Gorkem Durak, Frank H. Miller, Ulas Bagci, Rajesh Keswani

Imaging-based mortality prediction in patients with systemic sclerosis

Alec K Peltekian, Karolina Senkow, Gorkem Durak, Kevin M Grudzinski, Bradford C Bemiss, Jane E Dematte, Carrie Richardson, Nikolay S Markov, Mary Carns, Kathleen Aren, Alexandra Soriano, Matthew Dapas, Harris Perlman, Aaron Gundersheimer, Kavitha C Selvan, John Varga, Monique Hinchcliff, Krishnan Warrior, Catherine A Gao, Richard G Wunderink, GR Budinger, Alok N Choudhary, Anthony J Esposito, Alexander V Misharin, Ankit Agrawal, Ulas Bagci

Impact of AI-generated ADC maps on computer-aided diagnosis of prostate cancer: a feasibility study

Kutsev B. Ozyoruk, Stephanie A. Harmon, Enis C. Yilmaz, David G. Gelikman, Ulas Bagci, Benjamin D. Simon, Maria J. Merino, Rosina Lis, Sandeep Gurram, Bradford J. Wood, Peter A. Pinto, Peter L. Choyke , Baris Turkbey

IPMN malignancy risk assessment using MRI under federated learning paradigm

Halil Ertugrul Aktas, Andrea Bejar, Ziliang Hong, Hongyi Pan, Gorkem Durak, Elif Keles, Alpay Medetalibeyoglu, Zheyuan Zhang, Yuri Velichko, Concetto Spampinato, Ivo Schoots, Marco Bruno, Pallavi Tiwari, Candice W. Bolan, Tamas Gonda, Frank H. Miller, Rajesh Keswani, Ziyue Xu, Ulas Bagci